Copy of Gene Ontology Consortium

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Copy of Gene Ontology Consortium von Mind Map: Copy of Gene Ontology Consortium

1. Gene Ontology

1.1. Cellular Component

1.1.1. Component of a cell that is part of a larger object Rough endoplasmic reticulum Nucleus Ribosome

1.2. Biological Process

1.2.1. Series of events accomplished by one or more organized assemblies of molecular functions Metabolic process Cellular transport

1.3. Molecular Function

1.3.1. Activities that occur at the molecular level Catalytic activity Binding activity

1.4. GO Structure

2. Tools

2.1. AmiGO 2

2.1.1. Official web-based set of tools for searching and browsing the Gene Ontology database

2.2. GOOSE

2.2.1. GO Online SQL/Solr Environment

2.3. GO Enrichment Analysis

3. Current GO Consortium Contributing Groups

3.1. Berkeley Bioinformatics Open-source Projects (BBOP)

3.2. dictyBase

3.3. EcoliWiki

3.4. Ensembl

3.5. EnsemblPlants/Gramene

3.6. EnsemblFungi

3.7. FlyBase

3.8. GO Editorial Office at the European Bioinformatics Institute

3.9. Gramene

3.10. Institute for Genome Sciences, University of Maryland

3.11. InterPro

3.12. IntAct molecular interaction database

3.13. Aspergillus Genome Database (AspGD)

3.14. Pseudomonas Genome Database (PseudoCAP)

3.15. Microbial ENergy processes Gene Ontology Project (MENGO)


3.17. Alzheimer's Project at the University of Toronto.

3.18. GeneDB

3.19. J Craig Venter Institute

3.20. Mouse Genome Informatics (MGI)


3.22. PomBase

3.23. Rat Genome Database (RGD)

3.24. Reactome

3.25. Saccharomyces Genome Database (SGD)

3.26. The Arabidopsis Information Resource (TAIR)

3.27. UniProt-Gene Ontology Annotation (UniProt-GOA)

3.28. University College London-based annotation group

3.29. WormBase

3.30. The Zebrafish Model Organism Database (ZFIN)

3.31. AgBase

3.32. AstraZeneca

3.33. Candida Genome Database (CGD)

3.34. Muscle TRAIT

3.35. Plant-Associated Microbe Gene Ontology (PAMGO) Consortium

3.36. Tetrahymena Genome Database (TGD)

4. Consortium

4.1. Co-Directed

4.1.1. Judith Blake Jackson Laboratory Mouse gene annotation, ontology development Professor of Mammalian Genetics Citações 30472 Índice h 49 Índice i10 76

4.1.2. J. Michael Cherry Stanford University Yeast gene annotation, data production processes Department of Genetics Citações 37061 Índice h 51 Índice i10 76

4.1.3. Suzanna Lewis Lawrence Berkeley National Laboratory U.S. Department of Energy National Laboratory Managed by the University of California Berkeley Bioinformatics Open-source Projects GOC software development, ontology development

4.1.4. Paul Sternberg Caltech C. elegans gene annotation, Common Annotation Framework development

4.1.5. Paul Thomas University of Southern California Phylogenetic annotation, ontology development Professor of Biochemistry, University of Adelaide Citações 4947 Índice h 31 Índice i10 50

4.2. Council

4.2.1. Nick Brown FlyBase University of Cambridge Medical Research Council National Science Foundation Drosophila gene annotation

4.2.2. Rex Chisholm DictyBase Northwestern University Generic Model Organism Database Dictyostelium gene annotation

4.2.3. James Hu Texas A&M Gene annotation

4.2.4. Eva Huala The Arabidopsis Information Resource, Carnegie Institution for Science ABRC, Arabidopsis Biological Resource Center Phoenix Bioinformatics Arabidopsis gene annotation

4.2.5. Alex Bateman Claire O'Donovan UniProt, European Bioinformatics Institute Swiss Institute of Bioinformatics Protein Information Resource Universal Protein Resource Tools Core data Gene annotation

4.2.6. Helen Parkinson Ontologies Team lead, European Bioinformatics Institute European Molecular Biology Laboratory Ontology development

4.2.7. Monte Westerfield University of Oregon Zebrafish gene annotation Zebrafish International Resource Center Zebrafish Model Organism Database Latin American Zebrafish Network

5. The Open Biological and Biomedical Ontologies

5.1. Berkeley Bioinformatics Open Source Project

5.1.1. National Institute of General Medical Sciences Natuional Institutes of Health Genetics and Genome Sciences, UConn Health

5.1.2. National Human Genome Research Institute

5.2. OBO Foundry ontologies

5.2.1. Chemical entities of biological interest

5.2.2. Ontology for biomedical investigations

5.2.3. Phenotypic quality

5.2.4. Plant Ontology

5.2.5. PRotein Ontology (PRO)

5.2.6. Xenopus anatomy and development

5.2.7. Zebrafish anatomy and development

6. Resources used by the GO Consortium

6.1. Evidence Ontology (ECO)

6.2. Plant Ontology (PO)

6.3. Cell Type Ontology (CL)

6.4. Uber Anatomy Ontology (Uberon)

6.5. Chemical Entities of Biological Interest (ChEBI)

7. Citations

7.1. The Gene Ontology (GO) database and informatics resource - 2004

7.1.1. 2296

7.2. Gene Ontology: tool for the unification of biology - 2000

7.2.1. 14739

7.3. Gene ontology consortium: going forward - 2015

7.3.1. 8